This lyric doesn't bother me. The think that I really can't get over is REFUJEEZUS. Usually dumb lyrics don't bother me much but for some reason this just rubs me the wrong way. I take no issue with moles digging in holes but this is probably the worst moment on the record for me, and perhaps even Bono's worst lyric in my opinion.
I think it has to do with the inherently goofy concept of word combinations. It works well for something like RHCP with Californication, because they combined California and Sex. But here Bono sounds so horribly self serious talking about refugees and Jesus that it just comes off really gross in my mind. "Will you be my sanctuary?" And especially the delivery with the weird shouty emphasis is the worst part. I've tried to justify in my mind so it doesn't bother me (to no avail) because otherwise I enjoy American Soul.